Department of Physics

Hong Kong Baptist

University

224 Waterloo Road

Kowloon Tong

Hong Kong

Tel: (852) 3411 7031

Fax: (852) 3411 5813

[Home > Weekly talks]

Laboratory Weekly Meetings

  • 03/12/2008
    Speaker: Chunhui CAI
    Topic: Regulation of HOG1 function and localization.
  • 26/11/2008
    Speaker: Liang TIAN
    Topic: Introduction for Renormalization Group.
  • 19/11/2008
    Speaker: Zhu YANG
    Topic: Stochastic fluctuations in metabolic pathways.
    Reference: paper
    Materials prepared: slides file
  • 12/11/2008
    Speaker: Dr. Zhonghua QIAO
    Topic: Numerical Simulations for Spike Dynamics.
    Speaker: Weihan LI
    Topic: Random Close Packing.
    Reference: paper 1, paper 2
    Materials prepared: slides file
  • 6/11/2008
    Speaker: Yu BI
    Topic: Bioinformatics Study of Phosphorylation Network in Arabidopsis Thaliana.
    Speaker: Xue-fei LI
    Topic: Bacterial Quorum Sensing
    Reference: paper
    Materials prepared: slides file
  • 29/10/2008
    Speaker: Hui ZHI
    Topic: Enzyme Kinetic.
    Materials prepared: slides file
  • 24/10/2008
    Speaker: Chun-hui CAI
    Topic: Quantitative modeling of networks - HOG1 study
    Reference: paper
    Materials prepared: slides file
  • 15/10/2008
    Speaker: Liang TIAN
    Topic: Cluster Monte Carlo Algorithms & softening of first-order transition by disorder.
    Reference: paper
    Materials prepared: slides
    Speaker: Zhu YANG
    Topic: Enzyme Kinetics
    Materials prepared: slides file
  • 8/10/2008
    Speaker: Hui ZHI
    Topic: Yeast Osmoregulation
    Materials prepared: slides file
  • 24/10/2008
    Speaker: Xiong-fei FU
    Topic: Formation of new patterns by programming cell motility.
    Speaker: Wei-han LI
    Topic: A New Analytical Method for Computing Solvent-Accessible Surface Area of Macromolecules.
    Reference: paper
    Materials prepared: slides file
  • 17/9/2008
    Speaker: Zhu YANG
    Topic: Enzyme Regulaion -- Data from Brenda.
    Speaker: Liang TIAN
    Topic: Entropy-driven first-order phase transition in quantum compass model with Ly>3.
    Materials prepared: slides file
  • 10/9/2008
    Speaker: Daliang LI
    Topic: Power Law in Ranking.
    Speaker: Xue-fei LI
    Topic: Receptor clustering and signal processing in E.coli Chemotaxis.
    Reference: paper 1, paper 2
    Materials prepared: slides file
  • 3/9/2008
    Speaker: Jin LIANG
    Topic: Introduction of iGEM Project in HKU.
    Speaker: Jia-nan LI
    Topic: Self-Organized Critical Behavior (SOC)
    Reference: book, paper
    Materials prepared: slides file
  • 27/8/2008
    Speaker: Zhu YANG
    Topic: Transcription Regulation Motifs
    Reference: paper 1, paper 2
    Materials prepared: slides file
  • 20/8/2008
    Speaker: Chunhui CAI
    Topic: Osmosensing and HOG MAPK
    Materials prepared: slides file
  • 13/8/2006
    Speaker: Liang TIAN
    Topic:The yeast cell-cycle network: structure vs. function
    Reference: paper 1, paper 2
    Materials prepared: slides file
  • 11/10/2006
    Speaker: Chao WANG
    Topic: Experimental and computational assessment of conditionally essential genes in E. coli
    Reference: paper link
    Materials prepared: ppt file
  • 4/10/2006
    Speaker: Yang ZHU
    Topic: Regulated Flux-Balance Analysis (rFBA)
    Reference: paper link
    Materials prepared: ppt file
  • 27/9/2006
    Speaker: Chun-hui CAI
    Topic: Preliminary Results on TF pairs identification under different experimental conditions by Microarray and ChIP-on-chip data
    Reference:
    Materials prepared:
  • 13/9/2006
    Speaker: Chao WANG
    Topic: Transcriptional regulation of the fad regulon genes of Escherichia coli by ArcA
    Reference: paper link
    Materials prepared: ppt file
  • 6/9/2006
    Speaker: Yang ZHU
    Topic: Integrated analysis of regulatory and metabolic networks reveals novel regulatory mechanisms in Saccharomyces cerevisiae
    Reference: paper link
    Materials prepared: ppt file
  • 30/8/2006
    Speaker: Chun-hui CAI
    Topic: Predicting protein functions from redundancies in large-scale protein interaction networks
    Reference: paper link
    Materials prepared: ppt file
  • 19/7/2006
    Speaker: Chao WANG
    Topic: Gene regulation and metabolic flux reorganization in aerobic/anaerobic switch of E. coli
    Reference:
    Materials prepared: ppt file
  • 14/6/2006
    Speaker: Chun-hui CAI
    Topic: Genome-wide prediction ad characterization of interactions between transcription factors in S. cerevisiae
    Reference: paper link
    Materials prepared: Genome-wide prediction.ppt
  • 3/5/2006
    Speaker: Zhu YANG
    Topic: The global transcriptional regulatory network for metabolism in Escherichia coli exhibits few dominant functional states
    Reference: paper link
    Materials prepared: PPT
  • 26/4/2006
    Speaker: Sheng HUI
    Topic: Highly designable phenotypes and mutational buffers emerge from a systematic mapping between network topology and dynamic output
    Reference: paper link
    Materials prepared: PPT
  • 22/2/2006
    Speaker: Chun-hui CAI
    Topic: pollen tube model
    Reference:
    Materials prepared: pollen tube model.ppt
  • 15/2/2006
    Speaker: Fan XIA
    Topic: Endo/exocytosis in the pollen tube apex is differentially regulated by Ca2+ and GTPases
    Reference: paper link
    Materials prepared: ppt file
  • 8/2/2006
    Speaker: Sheng HUI
    Topic: Functional annotation and network reconstruction through cross-platform integration of microarray data
    Reference: paper link
    Materials prepared: ppt file
  • 23/1/2006
    Speaker: Chao WANG
    Topic: Effect of oxygen on the Escherichia coli ArcA and FNR regulation systems and metabolic responses
    Reference: paper link
    Materials prepared: ppt file
  • 4/11/2005
    Speaker: Chunhui CAI
    Topic: ROP1 Signaling in Oscillatory Pollen Tubes Growth
    Reference:
    Materials prepared: Review of Rop signaling1.ppt
  • 26/10/2005
    Speaker: Fan XIA
    Topic: Ion Channels in the Plasma Membrane of Pollen Tube
    Reference:
    Materials prepared: Ca channel.ppt
  • 28/9/2005
    Speaker: Chunhui CAI
    Topic: Messerli's model of pollen tube growth oscillation
    Reference: paper link
    Materials prepared: Messerli's model.ppt
  • 1/9/2005
    Speaker: Chao WANG
    Topic: Signal sensing mechanisms in the aerobic/anaerobic interface
    Reference: the aerobic/anaerobic interface
    Materials prepared:
  • 20/7/2005
    Speaker: Fan XIA
    Topic: GTPase's function in cell migration
    Reference:
    Materials prepared: How migration occurs.ppt
  • 6/7/2005
    Speaker: Sheng Hui
    Topic: Characterizing the metabolic phenotype: a phenotype phase plane analysis
    Reference: paper link
    Materials prepared: phaseplanes.pdf
  • 30/6/2005
    Speaker: Liu Haiguang, University of California at Davis
    Topic: MD simulation in protein dynamics studies
    Reference:
    Materials prepared:
  • 22/6/2005
    Speaker: Matt Shtrahman, University of Pittsburgh
    Topic: What can neurobiology learn from soft condensed matter physics?
    Reference:
    Materials prepared:
  • 4/5/2005
    Speaker: Chao WANG
    Topic: Method of MobyDick
    Reference:
    Materials prepared: Mechod of MobyDick
  • 20/4/2005
    Speaker: Sheng HUI
    Topic: Energy Balance Analysis
    Reference:
    Materials prepared: Energy Balance Analysis
  • 13/4/2005
    Speaker:Shenghua LIANG
    Topic: 2-Compound loop in E. coli Model iJR904
    Reference:
    Materials prepared: 2-Compound Loop.ppt
  • 6/4/2005
    Speaker: Chao WANG
    Topic: Transcription control reprogramming in genetic backup circuits
    Reference: paper link
    Materials prepared: presentation PPt
  • 24/3/2005
    Speaker: Chun-Hui CAI
    Topic: Regulation in Yeast cell cycle
    Reference:
    Materials prepared:
  • 16/3/2005
    Speaker: Shenghua Liang
    Topic: Topological loops in metabolic networks
    Reference:
    Materials prepared:
  • 9/3/2005
    Speaker: Chao WANG
    Topic: TRED -- a Transcriptional Regulatory Element Database
    Reference: paper link
    Materials prepared: online service
  • 1/3/2005
    Speaker: Sheng HUI
    Topic: Functional cartography of complex metabolic network
    Reference: a paper in Nature
    Materials prepared:
  • 22/2/2005
    Speaker: Cai Chun-hui
    Topic: TFs and involved genes in cell cycle
    Reference:
    Materials prepared:
  • 1/2/2005
    Speaker: Ming Xiang
    Topic: Honor Project on Complexity
    Reference:
    Materials prepared:
  • 25/1/2005
    Speaker: Sheng-hua Liang
    Topic: Comutational Discovery of gene modules and regulatory networks
    Reference:
    Materials prepared:

  • 11/1/2005 Tuesday
    Speaker: Hui Sheng
    Topic: regulation of gene expression in flux balance models of metabolism
    Reference: toymodel.pdf
    Materials prepared by the speaker:

  • 17/12/2004 Friday
    Speaker: Cai Chunhui
    Topic: Metabolic regulation and mathematical models
    Reference: Heinrich.pdf
    Materials prepared by the speaker:

  • 30/11/2004 Tuesday
    Speaker: Liang Shenghua
    Topic: Hierarchies of transcriptional regulation in E. coli metabolic network & A probabilistic functional network of yeast genes
    Reference: Lee.pdf
    Materials prepared by the speaker:

  • 26/11/2004 Friday
    Speaker: Wang Chao
    Topic: Constraint-based analysis of a genome-scale reconstructed metabolic network
    Reference:Palsson2003.pdf
    Materials prepared by the speaker:

  • 23/11/2004 Tuesday
    Speaker: Hui Sheng
    Topic: A layout algorithm for the metabolic network with TFs
    Reference:
    Materials prepared by the speaker:

  • 19/11/2004 Friday
    Speaker: Cai Chunhui
    Topic: Comparative genomics of yeast species
    Reference: Kellis.pdf
    Materials prepared by the speaker: Comparative Genomics Review.doc

  • 16/11/2004 Tuesday
    Speaker: Liang Shenghua
    Topic: Hierarchies of transcriptional regulation in E. coli metabolic network
    Reference: colitree.doc
    Materials prepared by the speaker: colitree.doc

  • 09/11/2004 Tuesday
    Speaker: Wang Chao
    Topic: Scale-rich metabolic networks: background and introduction
    Reference: Tanaka.pdf
    Materials prepared by the speaker: Scale-rich metabolic networks.ppt

  • 02/11/2004 Tuesday
    Speaker: Cai Chunhui
    Topic: Global regulators of cell cycle progression
    Reference: Regulators of Cell Cycle Progression
    Materials prepared by the speaker: Global Regulators of Cell Cycle Progression.ppt

  • 26/10/2004 Tuesday
    Speaker: Zhang Shaolin
    Topic: What can we learn from great thinkers?
    Reference: Ancient Chinese Thinkers I & II (in Chinese)
    Materials prepared by the speaker: N/A

  • 19/10/2004 Tuesday
    Speaker: Hui Sheng
    Topic: How transcriptional regulatory shapes metabolic network
    Materials prepared by the speaker: HowTRworks.pdf

  • 12/10/2004 Tuesday
    Speaker: Liang Shenghua
    Topic: Flux Balance Analysis (FBA)
    Reference: Kauffman.pdf & Segre.pdf
    Materials prepared by the speaker: Flux Balance Analysis.ppt

  • 05/10/2004 Tuesday
    Speaker: Wang Chao
    Topic: Reconstructing transcriptional regulatory network
    Reference: Li Hao's page of publications
    Materials prepared by the speaker: reconstructingTRnet.ppt

  • 28/09/2004 Tuesday
    Speaker: Hui Sheng
    Topic: Yeast transcriptional regulatory network and metabolic network
    References: Richard Young, et al. & A.-L. Barabasi, et al.
    Materials prepared by the speaker: Young&Barabasi.ppt

  • 21/09/2004 Tuesday
    Speaker: Cai Chunhui
    Topic: Genomic analysis of regulatory network dynamics reveals large topological changes
    Reference: MarkGerstein.pdf
    Materials prepared by the speaker: Gerstein.ppt (Updated)

  • 14/09/2004 Tuesday
    Speaker: Wang Chao
    Topic: REDUCE: Regulatory Element Detection Using Correlation with Expression
    Reference: Li Hao's page of publications
    Materials prepared by the speaker: reduce.ppt

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